delta.utils.cell_fluo

delta.utils.cell_fluo(fluo_frames, mask)

Extract mean fluorescence level from mask.

Parameters

fluo_frames3D array

Fluorescent images to extract fluo from. Dimensions are (channels, size_y, size_x).

mask2D numpy array of bool

Mask of the region to extract (typically a single cell). Dimensions are (size_y, size_x).

Returns

fluo_valuesarray of floats

Mean value per cell for each fluo frame.