delta.pipeline.ROI.extract_features

ROI.extract_features(frame: Optional[int] = None, fluo_frames: Optional[ndarray] = None, features: Tuple[str, ...] = ('length', 'width', 'area', 'perimeter', 'edges'))

Extract single cell features

Parameters

frameint, optional

The frame to extract for. If None, the earliest frame not yet extracted is run. The default is None.

fluo_frames3D array, optional

Fluorescent images to extract fluo from. Dimensions are (channels, size_y, size_x). The default is None.

featureslist or tuple of str, optional

Features to extract. Options are (“length”, “width”, “area”, “fluo1”, “fluo2”, “fluo3”…) The default is (“length”, “width”, “area”, “perimeter”, “edges”).

Returns

None.